Showing : R edgeR DE • reset
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nested modeling for unequal groups with edgeR
edger r edger de
updated 9.4 years ago by ★ 7.9k • written 9.4 years ago by ▴ 20
2
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6
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1.9k
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edgeR - making 12 contrast but only get 5 contrasts as a result
r edger de contrast design and contrast matrix
updated 9.4 years ago by ★ 29k • written 9.4 years ago by ▴ 300
2
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5
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2.3k
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ANOVA in EdgeR
edger main and interaction effects edger r edger de
9.9 years ago julie.green • 0
5
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3
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3.9k
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Understanding edgeR coefficients and design
edger r edger de rna-seq
updated 10.3 years ago by 53k • written 10.3 years ago by ▴ 30
2
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2
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5.1k
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EdgeR with normalized data
r edger de
updated 10.6 years ago by ★ 13k • written 10.6 years ago by • 0
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3
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9.6k
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What is difference between classic and GLM edgeR
r edger de
10.7 years ago adrianna-christina ▴ 10
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8
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3.7k
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how to design contrast formula with 2 factors multiple levels in edgeR?
R edgeR DE
10.9 years ago feicaiyi • 0
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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
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Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
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